Experimental Physics and Industrial Control System
Hi John,
It looks to me that the problem is that it is looking for a static version of libzmq, and there is only a dynamic version.
In the master branch these are the lines from that Makefile:
ifdef ZMQ_LIB
zmq_DIR += $(ZMQ_LIB)
PROD_LIBS += zmq
else
PROD_SYS_LIBS += zmq
endif
Did you define ZMQ_LIB? If you don't then it will search for it as a PROD_SYS_LIB, which means it will be fine with only a dynamic library. I suspect you defined ZMQ_LIB so it is looking for a static version, because you are building statically.
This is what I get when I link. I am also building statically. Note that -lzmq is after -Bdynamic, so it finds the shareable version.
/usr/bin/g++ -o eigerDetectorApp -Wl,-Bstatic -L/home/epics/devel/areaDetector-3-10/ADEiger/lib/linux-x86_64 -L/home/epics/devel/areaDetector-3-10/ADEiger/iocs/eigerIOC/lib/linux-x86_64 -L/home/epics/devel/areaDetector-3-10/ADCore/lib/linux-x86_64 -L/home/epics/devel/areaDetector-3-10/ADSupport/lib/linux-x86_64 -L/home/epics/devel/asyn-4-41/lib/linux-x86_64 -L/home/epics/devel/autosave-5-10/lib/linux-x86_64 -L/home/epics/devel/busy-1-7-2/lib/linux-x86_64 -L/home/epics/devel/calc-3-7-3/lib/linux-x86_64 -L/home/epics/devel/devIocStats-3-1-16/lib/linux-x86_64 -L/home/epics/devel/seq-2-2-5/lib/linux-x86_64 -L/home/epics/devel/sscan-2-11-3/lib/linux-x86_64 -L/usr/local/epics-devel/base-7.0.4/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/areaDetector-3-10/ADEiger/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/areaDetector-3-10/ADEiger/iocs/eigerIOC/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/areaDetector-3-10/ADCore/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/areaDetector-3-10/ADSupport/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/asyn-4-41/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/autosave-5-10/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/busy-1-7-2/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/calc-3-7-3/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/devIocStats-3-1-16/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/seq-2-2-5/lib/linux-x86_64 -Wl,-rpath,/home/epics/devel/sscan-2-11-3/lib/linux-x86_64 -Wl,-rpath,/usr/local/epics-devel/base-7.0.4/lib/linux-x86_64 -rdynamic -m64 eigerDetectorApp_registerRecordDeviceDriver.o eigerDetectorAppMain.o -leigerDetector -lfrozen -lhdf5_hl -lNDPlugin -lADBase -lqsrv -lntndArrayConverter -lnt -lpvDatabase -lpvAccessIOC -lpvAccessCA -lpvAccess -lpvData -lnetCDF -lMagick++ -lcoders -lMagick -ljbig -ljp2 -lbzlib -lpng -lwebp -llcms -lttf -lwmf -lfilters -ltiff -lxml2 -lNeXus -lhdf5 -lhdf5_hl -lbitshuffle -lblosc -lszip -lzlib -ljpeg -lasyn -lautosave -lbusy -lcalc -ldevIocStats -lsscan -lseq -lpv -ldbRecStd -ldbCore -lca -lCom -Wl,-Bdynamic -lzmq -lboost_system -lX11 -lXext -lpthread -lreadline -lm -lrt -ldl -lgcc
When I run ldd on the eigerDetectorApp executable this is where it is finding libzmq.so
corvette:eigerIOC/eigerApp/src>ldd ../../bin/linux-x86_64/eigerDetectorApp
linux-vdso.so.1 => (0x00007ffe9a3d1000)
libzmq.so.5 => /lib64/libzmq.so.5 (0x00007f05b31f2000)
What version of Linux are you using? I am using Centos 7 and I just installed the zmq package.
Mark
________________________________
From: John Dobbins <john.dobbins at cornell.edu>
Sent: Tuesday, November 24, 2020 4:48 PM
To: Mark Rivers; Perez Juarez, Emilio (DLSLtd,RAL,LSCI)
Cc: tech-talk at aps.anl.gov
Subject: Re: ADEiger for EIGER2
New problem:
/usr/bin/g++ -o eigerDetectorApp -Wl,-Bstatic -L/nfs/chess/epics/det/support/areaDetector/ADEiger/lib/linux-x86_64 -L/nfs/chess/epics/det/support/areaDetector/ADEiger/iocs/eigerIOC/lib/linux-x86_64 -L/nfs/chess/epics/det/base-7.0.3/lib/linux-x86_64 -L/nfs/chess/epics/det/support/alive-R1-1-1/lib/linux-x86_64 -L/nfs/chess/epics/det/support/areaDetector/ADCore/lib/linux-x86_64 -L/nfs/chess/epics/det/support/areaDetector/ADSupport/lib/linux-x86_64 -L/nfs/chess/epics/det/support/asyn-R4-40-1/lib/linux-x86_64 -L/nfs/chess/epics/det/support/autosave-R5-10/lib/linux-x86_64 -L/nfs/chess/epics/det/support/busy-R1-7-2/lib/linux-x86_64 -L/nfs/chess/epics/det/support/calc-R3-7-3/lib/linux-x86_64 -L/nfs/chess/epics/det/support/iocStats-3-1-16/lib/linux-x86_64 -L/nfs/chess/epics/det/support/seq-2-2-6/lib/linux-x86_64 -L/nfs/chess/epics/det/support/sscan-R2-11-3/lib/linux-x86_64 -L/nfs/opt/zmq-4.3.1-23.3.x86_64/lib -rdynamic -m64 eigerDetectorApp_registerRecordDeviceDriver.o eigerDetectorAppMain.o -leigerDetector -lfrozen -lhdf5_hl -lzmq -lNDPlugin -lADBase -lnetCDF -lMagick++ -lcoders -lMagick -ljbig -ljp2 -lbzlib -lpng -lwebp -llcms -lttf -lwmf -lfilters -ltiff -lxml2 -lNeXus -lhdf5 -lhdf5_hl -lbitshuffle -lblosc -lszip -lzlib -ljpeg -lasyn -lalive -lautosave -lbusy -lcalc -ldevIocStats -lsscan -lseq -lpv -ldbRecStd -ldbCore -lca -lCom -Wl,-Bdynamic -lX11 -lXext -lpthread -lreadline -lm -lrt -ldl -lgcc
/usr/bin/ld: cannot find -lzmq
but note the flag
-L/nfs/opt/zmq-4.3.1-23.3.x86_64/lib
and
jad22@chess62 $ ls -l /nfs/opt/zmq-4.3.1-23.3.x86_64/lib
lrwxrwxrwx 1 root root 21 Feb 8 2019 libpgm-5.2.so.0 -> libpgm-5.2.so.0.0.122
-rwxr-xr-x 1 root root 303296 Jan 28 2019 libpgm-5.2.so.0.0.122
lrwxrwxrwx 1 root root 21 Feb 8 2019 libpgm.so -> libpgm-5.2.so.0.0.122
lrwxrwxrwx 1 root root 19 Feb 8 2019 libsodium.so -> libsodium.so.18.1.1
lrwxrwxrwx 1 root root 19 Feb 8 2019 libsodium.so.18 -> libsodium.so.18.1.1
-rw-r--r-- 1 root root 421512 Jan 4 2019 libsodium.so.18.1.1
lrwxrwxrwx 1 root root 15 Feb 8 2019 libzmq.so -> libzmq.so.5.2.1
lrwxrwxrwx 1 root root 15 Feb 8 2019 libzmq.so.5 -> libzmq.so.5.2.1
-rwxr-xr-x 1 root root 663568 Jan 28 2019 libzmq.so.5.2.1
drwxr-xr-x 2 root root 22 Apr 24 2019 static
Is it uphappy with the libzmq version?
Does libsodium have to be executable?
Apologies for my ignorance.
John
________________________________
From: Mark Rivers <rivers at cars.uchicago.edu>
Sent: Tuesday, November 24, 2020 3:55 PM
To: John Dobbins <john.dobbins at cornell.edu>; Perez Juarez, Emilio (DLSLtd,RAL,LSCI) <emilio.perez-juarez at diamond.ac.uk>
Cc: tech-talk at aps.anl.gov <tech-talk at aps.anl.gov>
Subject: Re: ADEiger for EIGER2
Hi John,
lz4 and bitshuffle are both provided in ADSupport/supportApp/bitshuffleSrc. I would strongly recommend using those, and not your system versions.
I don't know why that code for lz4 and bitshuffle was added to eigerApp/src/Makefile. It should not be needed. I would try deleting it.
Mark
________________________________
From: John Dobbins <john.dobbins at cornell.edu>
Sent: Tuesday, November 24, 2020 1:29 PM
To: Perez Juarez, Emilio (DLSLtd,RAL,LSCI); Mark Rivers
Cc: tech-talk at aps.anl.gov
Subject: Re: ADEiger for EIGER2
Sorry, that got sent prematurely.
________________________________
From: John Dobbins <john.dobbins at cornell.edu>
Sent: Tuesday, November 24, 2020 2:27 PM
To: Perez Juarez, Emilio (DLSLtd,RAL,LSCI) <emilio.perez-juarez at diamond.ac.uk>; Mark Rivers <rivers at cars.uchicago.edu>
Cc: tech-talk at aps.anl.gov <tech-talk at aps.anl.gov>
Subject: Re: ADEiger for EIGER2
I get a build error related to the lz4 library (see below) I poked around and I am confused about where lz4 gets configured. I am using base-7.0.3 , areaDetector-master (is that a problem?)
On out SL7 systems
>locate lz4
/usr/lib/liblz4.so.1
/usr/lib/liblz4.so.1.7.5
/usr/lib64/liblz4.so.1
/usr/lib64/liblz4.so.1.7.5
but I also thought bitshhuffle from ADSupport provides LZ4.
Finally, I see that
areaDetector/ADEiger/eigerApp/src/Makefile contains a section
ifdef LZ4_LIB
lz4_DIR += $(LZ4_LIB)
LIB_LIBS += lz4
bitshuffle_DIR += $(LZ4_LIB)
LIB_LIBS += bitshuffle
else
LIB_SYS_LIBS += lz4
LIB_SYS_LIBS += bitshuffle
endif
not in other ADEiger installs I have.
John
/usr/bin/g++ -o libeigerDetector.so -shared -fPIC -Wl,-hlibeigerDetector.so -L/nfs/chess/epics/det/support/areaDetector/ADEiger/lib/linux-x86_64 -L/nfs/chess/epics/det/base-7.0.3/lib/linux-x86_64 -L/nfs/chess/epics/det/support/areaDetector/ADCore/lib/linux-x86_64 -L/nfs/chess/epics/det/support/areaDetector/ADSupport/lib/linux-x86_64 -L/nfs/chess/epics/det/support/asyn-R4-40-1/lib/linux-x86_64 -L/nfs/opt/zmq-4.3.1-23.3.x86_64/lib -Wl,-rpath,/nfs/chess/epics/det/support/areaDetector/ADEiger/lib/linux-x86_64 -Wl,-rpath,/nfs/chess/epics/det/base-7.0.3/lib/linux-x86_64 -Wl,-rpath,/nfs/chess/epics/det/support/areaDetector/ADCore/lib/linux-x86_64 -Wl,-rpath,/nfs/chess/epics/det/support/areaDetector/ADSupport/lib/linux-x86_64 -Wl,-rpath,/nfs/chess/epics/det/support/asyn-R4-40-1/lib/linux-x86_64 -Wl,-rpath,/nfs/opt/zmq-4.3.1-23.3.x86_64/lib -rdynamic -m64 eigerDetector.o restApi.o streamApi.o eigerParam.o -lzmq -lADBase -lasyn -lnetCDF -lMagick++ -lcoders -lMagick -ljbig -ljp2 -lbzlib -lpng -lwebp -llcms -lttf -lwmf -lfilters -ltiff -lxml2 -lNeXus -lhdf5 -lhdf5_hl -lbitshuffle -lblosc -lszip -lzlib -ljpeg -ldbRecStd -ldbCore -lca -lCom -llz4 -lbitshuffle -lhdf5_hl -lX11 -lXext -lpthread -lreadline -lm -lrt -ldl -lgcc
/usr/bin/ld: cannot find -llz4
collect2: error: ld returned 1 exit status
________________________________
From: Perez Juarez, Emilio (DLSLtd,RAL,LSCI) <emilio.perez-juarez at diamond.ac.uk>
Sent: Tuesday, November 24, 2020 11:47 AM
To: John Dobbins <john.dobbins at cornell.edu>; Mark Rivers <rivers at cars.uchicago.edu>
Cc: tech-talk at aps.anl.gov <tech-talk at aps.anl.gov>
Subject: Re: ADEiger for EIGER2
Hi, here's another approach:
$ git clone https://github.com/areaDetector/ADEiger
$ cd ADEiger/
$ git fetch origin pull/30/head:pr-branch
$ git checkout pr-branch
I think this way you get the result of merging to the target branch
Kind Regards,
Emilio
________________________________
From: Tech-talk <tech-talk-bounces at aps.anl.gov> on behalf of Mark Rivers via Tech-talk <tech-talk at aps.anl.gov>
Sent: 24 November 2020 16:33
To: John Dobbins <john.dobbins at cornell.edu>
Cc: tech-talk at aps.anl.gov <tech-talk at aps.anl.gov>
Subject: Re: ADEiger for EIGER2
Hi John,
You can clone the repository issuing that pull request and then checkout that branch:
git clone https://github.com/dls-controls/ADEiger/
cd ADEiger
git checkout 1.8
Mark
________________________________
From: Tech-talk <tech-talk-bounces at aps.anl.gov> on behalf of John Dobbins via Tech-talk <tech-talk at aps.anl.gov>
Sent: Tuesday, November 24, 2020 10:16 AM
To: tech-talk at aps.anl.gov
Subject: ADEiger for EIGER2
All,
I have a new EIGER 2 detector. I understand that this
https://github.com/areaDetector/ADEiger/pull/30
is the appropriate ADEiger for an EIGER 2. True?
Can someone tell me how to clone this pull?
Thanks,
John Dobbins
Research Support Specialist
Cornell High Energy Synchrotron Source
Cornell University
www.chess.cornell.edu<http://www.chess.cornell.edu<http://www.chess.cornell.edu<http://www.chess.cornell.edu<http://www.chess.cornell.edu<http://www.chess.cornell.edu<http://www.chess.cornell.edu<http://www.chess.cornell.edu>>>
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