Hi Stuart,
I just loaded and built ADCore 2.0.
I ran the simDetector with UInt8 data, RGB1 color mode, 1024x1024 frame size, which seemed like what you were using. It worked fine.
However, I just looked more closely at your output:
2015/03/04 17:16:23.570 NDFileHDF5::createXMLFileLayout Default dataset name: /entry/instrument/detector/data
2015/03/04 17:16:23.570 NDFileHDF5::createAttributeDataset Creating attribute datasets. extradims=0 attribute count=1
2015/03/04 17:16:23.570 NDFileHDF5::writeFile getting attribute list
2015/03/04 17:16:23.570 NDFileHDF5::writeFile copying attribute list
2015/03/04 17:16:23.570 NDFileHDF5::writeFile: set_extent dims={1024,1024,3}
This output tells me that you are not actually running ADCore 2.0.
2015/03/04 17:16:23.570 NDFileHDF5::createXMLFileLayout Default dataset name: /entry/instrument/detector/data
The createXMLFileLayout method was not present in ACCore 2.0, so you must be running a more recent version.
Can you tell me what version you are running?
Mark
________________________________________
From: [email protected] [[email protected]] on behalf of Wilkins, Stuart [[email protected]]
Sent: Wednesday, March 04, 2015 4:21 PM
To: [email protected]
Subject: Problem with HDF5 plugin for areaDetector
Hi,
I am having problems with the simdetector in Areadetector 2.0. I am running the HDF5 plugin and on trying to write a frame to disk, it segfaults. I have tried to start from a fresh state by taking away the save/restore files but nothing seems to fix it. Turning on traceback gives the errors below. Has anyone had this problem?
Thanks,
Stuart
2015/03/04 17:16:23.543 XF:23ID1-ES{Tst-Cam:1}HDF1:PoolFreeBuffers devAsynInt32 process value=0
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:ArrayCounter_RBV devAsynInt32::interruptCallbackInput new value=1
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:UniqueId_RBV devAsynInt32::interruptCallbackInput new value=4
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:TimeStamp_RBV devAsynFloat64::interruptCallbackInput new value=794355383.558608
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:EpicsTSSec_RBV devAsynInt32::interruptCallbackInput new value=794355383
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:EpicsTSNsec_RBV devAsynInt32::interruptCallbackInput new value=565638532
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteStatus devAsynInt32::interruptCallbackInput new value=0
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:ArrayCounter_RBV devAsynInt32::getCallbackValue from ringBuffer value=1
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:UniqueId_RBV devAsynInt32::getCallbackValue from ringBuffer value=4
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteFile devAsynBusy::interruptCallback new value=1
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:TimeStamp_RBV devAsynFloat64::getCallbackValue from ringBuffer value=794355383.558608
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:EpicsTSSec_RBV devAsynInt32::getCallbackValue from ringBuffer value=794355383
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:EpicsTSNsec_RBV devAsynInt32::getCallbackValue from ringBuffer value=565638532
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteStatus devAsynInt32::getCallbackValue from ringBuffer value=0
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteFile_RBV devAsynInt32::interruptCallbackInput new value=1
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteFile_RBV devAsynInt32::getCallbackValue from ringBuffer value=1
2015/03/04 17:16:23.566 NDFileHDF5::openFile Filename: /GPFS/xf23id/xf23id1/ccdtestdata/2015/3/4/4848c262-131d-49bb-b76a-db72c2ede134_000000.h5
2015/03/04 17:16:23.567 NDFileHDF5::openFile attribute list copied. num pArray attributes = 1 local copy = 1
2015/03/04 17:16:23.567 NDFileHDF5::configureDims NDArray: { 3, 1024, 1024, }
2015/03/04 17:16:23.567 NDFileHDF5::configureDims dimension report:
framesize 1024, 1024, 3,
chunkdims 1024, 1024, 3,
maxdims 1024, 1024, 3,
dims 1024, 1024, 3,
offset 0, 0, 0,
virtual 0,
2015/03/04 17:16:23.567 NDFileHDF5::createNewFile Setting istorek=1
2015/03/04 17:16:23.568 NDFileHDF5::createFileLayout Creating dataspace with given dimensions
2015/03/04 17:16:23.568 NDFileHDF5::createFileLayout Configuring chunking
2015/03/04 17:16:23.568 NDFileHDF5::createFileLayout Setting fillvalue
2015/03/04 17:16:23.568 NDFileHDF5::createFileLayout Empty layout file, use default layout
2015/03/04 17:16:23.569 NDFileHDF5::createXMLFileLayout Root tree: < Group: '' groups=1 dsets=0 attr=0>
< Group: '/entry' groups=2 dsets=0 attr=1>
< Group: '/entry/data' groups=0 dsets=0 attr=1>
< Group: '/entry/instrument' groups=3 dsets=0 attr=1>
< Group: '/entry/instrument/NDAttributes' groups=0 dsets=0 attr=1>
< Group: '/entry/instrument/detector' groups=1 dsets=1 attr=1>
< Group: '/entry/instrument/detector/NDAttributes' groups=0 dsets=1 attr=1>
< Group: '/entry/instrument/performance' groups=0 dsets=1 attr=0>
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXentry
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXdata
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXinstrument
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXcollection
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXdetector
2015/03/04 17:16:23.569 NDFileHDF5::createDatasetDetector Setting cache size=3145728 slots=0
2015/03/04 17:16:23.569 NDFileHDF5::createDatasetDetector Creating first empty dataset called "data"
2015/03/04 17:16:23.570 NDFileHDF5::writeH5attrStr name=NX_class value=SDS
2015/03/04 17:16:23.570 NDFileHDF5::writeH5attrInt32 name=signal value=1
2015/03/04 17:16:23.570 NDFileHDF5::writeH5attrStr name=NX_class value=NXcollection
2015/03/04 17:16:23.570 NDFileHDF5::createXMLFileLayout Default dataset name: /entry/instrument/detector/data
2015/03/04 17:16:23.570 NDFileHDF5::createAttributeDataset Creating attribute datasets. extradims=0 attribute count=1
2015/03/04 17:16:23.570 NDFileHDF5::writeFile getting attribute list
2015/03/04 17:16:23.570 NDFileHDF5::writeFile copying attribute list
2015/03/04 17:16:23.570 NDFileHDF5::writeFile: set_extent dims={1024,1024,3}
HDF5-DIAG: Error detected in HDF5 (1.8.8) thread 139838595618560:
#000: ../../../src/H5Dio.c line 245 in H5Dwrite(): file selection+offset not within extent
major: Dataspace
minor: Out of range
Segmentation fault
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