Problem with HDF5 plugin for areaDetector

["Wilkins, Stuart" <swilkins@bnl.gov>]

Hi,

I am having problems with the simdetector in Areadetector 2.0. I am running the HDF5 plugin and on trying to write a frame to disk, it segfaults. I have tried to start from a fresh state by taking away the save/restore files but nothing seems to fix it. Turning on traceback gives the errors below. Has anyone had this problem?

Thanks,
Stuart

2015/03/04 17:16:23.543 XF:23ID1-ES{Tst-Cam:1}HDF1:PoolFreeBuffers devAsynInt32 process value=0
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:ArrayCounter_RBV devAsynInt32::interruptCallbackInput new value=1
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:UniqueId_RBV devAsynInt32::interruptCallbackInput new value=4
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:TimeStamp_RBV devAsynFloat64::interruptCallbackInput new value=794355383.558608
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:EpicsTSSec_RBV devAsynInt32::interruptCallbackInput new value=794355383
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:EpicsTSNsec_RBV devAsynInt32::interruptCallbackInput new value=565638532
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteStatus devAsynInt32::interruptCallbackInput new value=0
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:ArrayCounter_RBV devAsynInt32::getCallbackValue from ringBuffer value=1
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:UniqueId_RBV devAsynInt32::getCallbackValue from ringBuffer value=4
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteFile devAsynBusy::interruptCallback new value=1
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:TimeStamp_RBV devAsynFloat64::getCallbackValue from ringBuffer value=794355383.558608
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:EpicsTSSec_RBV devAsynInt32::getCallbackValue from ringBuffer value=794355383
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:EpicsTSNsec_RBV devAsynInt32::getCallbackValue from ringBuffer value=565638532
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteStatus devAsynInt32::getCallbackValue from ringBuffer value=0
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteFile_RBV devAsynInt32::interruptCallbackInput new value=1
2015/03/04 17:16:23.566 XF:23ID1-ES{Tst-Cam:1}HDF1:WriteFile_RBV devAsynInt32::getCallbackValue from ringBuffer value=1
2015/03/04 17:16:23.566 NDFileHDF5::openFile Filename: /GPFS/xf23id/xf23id1/ccdtestdata/2015/3/4/4848c262-131d-49bb-b76a-db72c2ede134_000000.h5
2015/03/04 17:16:23.567 NDFileHDF5::openFile attribute list copied. num pArray attributes = 1 local copy = 1
2015/03/04 17:16:23.567 NDFileHDF5::configureDims  NDArray:   {     3, 1024, 1024, }
2015/03/04 17:16:23.567 NDFileHDF5::configureDims dimension report: 
 framesize   1024,  1024,     3,
 chunkdims   1024,  1024,     3,
   maxdims   1024,  1024,     3,
      dims   1024,  1024,     3,
    offset      0,     0,     0,
   virtual      0,
2015/03/04 17:16:23.567 NDFileHDF5::createNewFile Setting istorek=1
2015/03/04 17:16:23.568 NDFileHDF5::createFileLayout Creating dataspace with given dimensions
2015/03/04 17:16:23.568 NDFileHDF5::createFileLayout Configuring chunking
2015/03/04 17:16:23.568 NDFileHDF5::createFileLayout Setting fillvalue
2015/03/04 17:16:23.568 NDFileHDF5::createFileLayout Empty layout file, use default layout
2015/03/04 17:16:23.569 NDFileHDF5::createXMLFileLayout Root tree: < Group: '' groups=1 dsets=0 attr=0>
				  < Group: '/entry' groups=2 dsets=0 attr=1>
				  < Group: '/entry/data' groups=0 dsets=0 attr=1>
				  < Group: '/entry/instrument' groups=3 dsets=0 attr=1>
				    < Group: '/entry/instrument/NDAttributes' groups=0 dsets=0 attr=1>
				    < Group: '/entry/instrument/detector' groups=1 dsets=1 attr=1>
				      < Group: '/entry/instrument/detector/NDAttributes' groups=0 dsets=1 attr=1>
				    < Group: '/entry/instrument/performance' groups=0 dsets=1 attr=0>
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXentry
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXdata
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXinstrument
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXcollection
2015/03/04 17:16:23.569 NDFileHDF5::writeH5attrStr name=NX_class value=NXdetector
2015/03/04 17:16:23.569 NDFileHDF5::createDatasetDetector Setting cache size=3145728 slots=0
2015/03/04 17:16:23.569 NDFileHDF5::createDatasetDetector Creating first empty dataset called "data"
2015/03/04 17:16:23.570 NDFileHDF5::writeH5attrStr name=NX_class value=SDS
2015/03/04 17:16:23.570 NDFileHDF5::writeH5attrInt32 name=signal value=1
2015/03/04 17:16:23.570 NDFileHDF5::writeH5attrStr name=NX_class value=NXcollection
2015/03/04 17:16:23.570 NDFileHDF5::createXMLFileLayout Default dataset name: /entry/instrument/detector/data
2015/03/04 17:16:23.570 NDFileHDF5::createAttributeDataset Creating attribute datasets. extradims=0 attribute count=1
2015/03/04 17:16:23.570 NDFileHDF5::writeFile getting attribute list
2015/03/04 17:16:23.570 NDFileHDF5::writeFile copying attribute list
2015/03/04 17:16:23.570 NDFileHDF5::writeFile: set_extent dims={1024,1024,3}
HDF5-DIAG: Error detected in HDF5 (1.8.8) thread 139838595618560:
  #000: ../../../src/H5Dio.c line 245 in H5Dwrite(): file selection+offset not within extent
    major: Dataspace
    minor: Out of range
Segmentation fault